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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
7
ChIP-seq
4
total RNA-seq
2
Hi-C
Assay category
12
DNA accessibility
7
DNA binding
4
Transcription
2
3D chromatin structure
Target of assay
5
histone
5
histone modification
4
broad histone mark
2
control
1
narrow histone mark
Date released
8
February, 2021
8
February, 2023
8
October, 2019
1
March, 2020
Available data
28
bam
21
bed narrowPeak
15
bigWig
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
25
Homo sapiens
Biosample type
16
tissue
9
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
16
hg19
8
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
25 results
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ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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primary cell
endothelial cell of umbilical vein
7
2
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