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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
4
total RNA-seq
2
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
15
DNA accessibility
4
Transcription
2
3D chromatin structure
2
DNA binding
Target of assay
15
histone
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
8
February, 2021
8
February, 2023
6
October, 2019
1
March, 2020
Available data
13
bam
11
bed narrowPeak
4
bed bed3
4
txt
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
23
Homo sapiens
Biosample type
16
tissue
7
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
17
hg19
10
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
23 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
2
2
2
1
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