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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
68
ChIP-seq
7
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
68
DNA binding
9
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
57
August, 2017
18
October, 2018
3
July, 2019
2
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
42
bam
39
fastq
25
bigWig
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
88
Homo sapiens
Biosample type
87
tissue
1
in vitro differentiated cells
1
primary cell
Organ
544
liver
540
pancreas
385
epithelium
310
heart
291
kidney
266
brain
200
connective tissue
170
vasculature
165
blood vessel
115
limb
97
bone element
90
musculature of body
88
adipose tissue
84
artery
59
blood
59
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
1
omental fat pad
8
1
1
2
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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