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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
58
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
2
Capture-C
2
STARR-seq
1
Hi-C
1
pCHi-C
Assay category
107
Transcription
83
DNA accessibility
1
3D chromatin structure
Date released
134
August, 2021
47
September, 2023
14
May, 2023
1
May, 2021
Available data
66
bed narrowPeak
64
xls
57
txt
2
bed bed3+
2
bigWig
1
hic
Organism
196
Homo sapiens
Biosample type
189
tissue
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
0
skin of body
Project
148
AMP
47
KPMP
1
T1D
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
196 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
pCHi-C
tissue
kidney
75
58
49
6
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
cell line
HEK293T
2
primary cell
adult endothelial progenitor cell
1
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