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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
9
Transcription
6
DNA methylation
3
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
45
Homo sapiens
Biosample type
32
tissue
13
primary cell
Organ
916
pancreas
724
liver
673
connective tissue
494
epithelium
488
adipose tissue
360
heart
275
kidney
236
brain
214
vasculature
212
blood vessel
159
bone element
137
artery
82
limb
69
blood
69
bodily fluid
57
eye
44
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bed broadPeak
assay_title!
Hi-C
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
muscle of leg
7
1
psoas muscle
2
1
gastrocnemius medialis
1
islet of Langerhans
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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