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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
13
DNA binding
6
3D chromatin structure
5
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
7
histone
7
histone modification
6
control
4
broad histone mark
3
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
1
October, 2019
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
bed broadPeak
4
bam
3
bed bedMethyl
3
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
31
Homo sapiens
Biosample type
28
tissue
3
primary cell
Organ
304
pancreas
246
liver
228
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
68
brain
66
adipose tissue
55
eye
43
vasculature
41
blood vessel
30
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
27
hg19
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed broadPeak
assembly!
GRCh38
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
islet of Langerhans
1
+ See 1 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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