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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
16
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
3
DNA accessibility
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
control
4
narrow histone mark
Date released
13
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2019
Available data
57
bigWig
51
bed narrowPeak
bed broadPeak
44
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
38
Homo sapiens
Biosample type
38
tissue
primary cell
Organ
716
liver
641
connective tissue
579
pancreas
486
adipose tissue
353
heart
250
kidney
229
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
41
nerve
37
embryo
37
musculature of body
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
4
1
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
islet of Langerhans
1
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