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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
30
ATAC-seq
25
total RNA-seq
6
Hi-C
RRBS
6
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
68
DNA accessibility
44
DNA binding
28
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
31
February, 2023
22
August, 2017
22
October, 2019
9
July, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
153
Homo sapiens
Biosample type
136
tissue
17
primary cell
Organ
944
pancreas
789
liver
683
connective tissue
518
epithelium
491
adipose tissue
391
heart
350
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
103
hg19
59
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
assay_title!
RRBS
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
islet of Langerhans
2
2
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
skeletal muscle cell
2
1
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