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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
19
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
GRO-seq
Assay category
41
DNA binding
19
Transcription
4
DNA accessibility
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
narrow histone mark
3
transcription factor
Date released
35
October, 2019
10
February, 2018
8
August, 2021
8
December, 2017
2
May, 2021
1
February, 2020
1
January, 2018
Available data
62
bam
45
bigWig
26
bed narrowPeak
19
fastq
19
tsv
18
bigBed narrowPeak
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
65
Homo sapiens
Biosample type
36
tissue
21
in vitro differentiated cells
8
cell line
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
1
hg18
Lab
65
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
GRO-seq
tissue
tibial nerve
27
5
1
2
islet of Langerhans
1
in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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