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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
20
DNase-seq
19
total RNA-seq
2
ATAC-seq
1
GRO-seq
Assay category
57
DNA binding
22
DNA accessibility
19
Transcription
Target of assay
36
histone
36
histone modification
20
broad histone mark
18
control
16
narrow histone mark
3
transcription factor
Date released
43
October, 2019
18
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
96
bam
78
bigWig
59
bed narrowPeak
44
bigBed narrowPeak
27
fastq
23
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
19
tsv
Organism
99
Homo sapiens
Biosample type
62
tissue
29
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
78
GRCh38
78
hg19
1
hg18
Lab
99
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
2
5
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
islet of Langerhans
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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