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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
21
ChIP-seq
1
Hi-C
Assay category
25
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
22
June, 2019
19
August, 2017
2
November, 2018
2
October, 2019
2
September, 2017
Available data
707
bam
641
bigWig
471
fastq
417
tsv
232
bed narrowPeak
109
bigBed narrowPeak
80
zippedFastqFolder
47
bed bed3+
39
bed broadPeak
25
bigBed broadPeak
19
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
47
Homo sapiens
Biosample type
45
tissue
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
0
skin of body
Project
47
AMP
Genome assembly (visualization)
47
GRCh38
45
hg19
Lab
47
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
47 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
renal pelvis
10
body of pancreas
4
left renal pelvis
4
right renal pelvis
4
+ See 1 more…
cell line
Panc1
1
1
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