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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
19
DNA binding
9
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
10
August, 2017
9
July, 2019
6
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
10
tsv
7
tagAlign
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
72
Homo sapiens
Biosample type
63
tissue
9
primary cell
Organ
866
pancreas
747
liver
639
connective tissue
474
epithelium
471
adipose tissue
335
kidney
334
heart
214
brain
190
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
71
musculature of body
69
blood
69
bodily fluid
60
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
54
hg19
45
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
assay_title!
RRBS
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
3
1
skeletal muscle tissue
10
1
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
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