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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
5
RRBS
2
pCHi-C
2
total RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
26
August, 2017
2
February, 2020
2
June, 2019
2
March, 2020
2
May, 2019
2
May, 2022
1
January, 2018
1
July, 2019
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
fastq
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
38
Homo sapiens
Biosample type
35
tissue
3
primary cell
Organ
303
pancreas
256
liver
222
epithelium
148
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
40
vasculature
38
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
71
hg19
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
RRBS
pCHi-C
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
2
gastrocnemius medialis
1
left ventricle myocardium
1
psoas muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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