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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
9
ATAC-seq
6
Hi-C
5
RRBS
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
Transcription
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
65
October, 2019
43
June, 2019
26
August, 2017
7
May, 2019
6
February, 2021
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
158
Homo sapiens
Biosample type
146
tissue
12
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
0
small intestine
Project
158
AMP
Genome assembly (visualization)
121
hg19
101
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
1
skeletal muscle tissue
22
1
4
1
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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