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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
37
DNase-seq
8
total RNA-seq
3
ATAC-seq
2
small RNA-seq
1
WGBS
Assay category
69
DNA binding
40
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
69
histone
69
histone modification
46
broad histone mark
23
narrow histone mark
Date released
52
October, 2019
41
June, 2019
13
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
16
tsv
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
120
Homo sapiens
Biosample type
109
tissue
11
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
0
small intestine
Project
120
AMP
Genome assembly (visualization)
119
hg19
105
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
skeletal muscle tissue
13
1
1
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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