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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
13
total RNA-seq
9
ATAC-seq
6
Hi-C
6
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
16
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
26
August, 2017
12
July, 2019
7
May, 2019
6
February, 2021
6
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
132
bam
121
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
17
tsv
15
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
176
Homo sapiens
Biosample type
161
tissue
15
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
133
hg19
112
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
4
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 14 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
pericardium fibroblast
1
See all biosamples
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