Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
27
DNA binding
8
Transcription
5
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
control
Date released
23
August, 2017
9
June, 2019
6
March, 2020
5
July, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
29
bigWig
22
bed narrowPeak
15
bam
14
bed broadPeak
13
tagAlign
9
bigBed narrowPeak
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
47
Homo sapiens
Biosample type
35
tissue
12
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
35
hg19
15
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
target.investigated_as!
control
organ_slims!
limb
BIOSAMPLE
ASSAY
47 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RRBS
total RNA-seq
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
small intestine
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
Download