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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
2
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
8
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
15
histone
15
histone modification
broad histone mark
6
narrow histone mark
2
control
Date released
11
October, 2019
2
March, 2020
Available data
11
bam
8
bed narrowPeak
8
bigBed narrowPeak
8
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
tar
1
tsv
Organism
13
Homo sapiens
Biosample type
12
primary cell
1
tissue
Organ
868
pancreas
746
liver
640
connective tissue
479
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
190
vasculature
184
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
12
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
13
AMP
Genome assembly (visualization)
9
hg19
7
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
broad histone mark
files.file_type!
tar
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
8
2
2
tissue
small intestine
1
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