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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
2
WGBS
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
14
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
Available data
59
bam
50
fastq
44
bigWig
27
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
29
in vitro differentiated cells
24
tissue
8
cell line
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
44
GRCh38
42
hg19
1
hg18
Lab
61
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
WGBS
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
2
1
1
cell line
H1-hESC
8
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