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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
94
ChIP-seq
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
94
DNA binding
8
DNA methylation
3
DNA accessibility
Target of assay
39
histone
39
histone modification
32
control
24
broad histone mark
23
transcription factor
15
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
May, 2023
1
October, 2019
Available data
463
bam
437
bigWig
402
tsv
65
fastq
23
bed narrowPeak
21
bigBed narrowPeak
9
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
509
Homo sapiens
Biosample type
507
tissue
2
primary cell
1
in vitro differentiated cells
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
510
AMP
Genome assembly (visualization)
437
GRCh38
434
hg19
Lab
510
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
510 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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