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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
19
DNase-seq
2
WGBS
ATAC-seq
1
pCHi-C
Assay category
20
DNA binding
19
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
18
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
March, 2020
Available data
41
bam
33
bigWig
31
bed narrowPeak
31
bigBed narrowPeak
23
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
42
Homo sapiens
Biosample type
42
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
33
GRCh38
31
hg19
Lab
42
AMP-T2D consortium
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
DNase-seq
WGBS
pCHi-C
tissue
spleen
20
1
2
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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