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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
19
DNase-seq
14
total RNA-seq
2
WGBS
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
19
DNA accessibility
14
Transcription
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
18
June, 2019
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
Available data
77
bam
62
bigWig
50
fastq
45
bed narrowPeak
31
bigBed narrowPeak
22
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
15
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
79
Homo sapiens
Biosample type
42
tissue
29
in vitro differentiated cells
8
cell line
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
62
GRCh38
60
hg19
1
hg18
Lab
79
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
GRO-seq
pCHi-C
tissue
spleen
20
1
2
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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