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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
125
ChIP-seq
61
ATAC-seq
11
snATAC-seq
6
WGBS
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
1
DNase-seq
Assay category
291
Transcription
125
DNA binding
75
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
67
histone
67
histone modification
37
broad histone mark
37
control
30
narrow histone mark
23
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
135
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
13
November, 2018
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
July, 2019
6
September, 2017
5
October, 2017
4
March, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
453
bam
389
bigWig
276
tsv
237
fastq
137
bed narrowPeak
75
bigBed narrowPeak
28
bed bed3+
bed broadPeak
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
7
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
508
Homo sapiens
Biosample type
509
tissue
346
primary cell
91
cell line
3
in vitro differentiated cells
Organ
544
connective tissue
485
adipose tissue
485
pancreas
358
liver
286
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
479
AMP
30
T1D
Genome assembly (visualization)
409
hg19
388
GRCh38
Lab
448
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
DNase-seq
tissue
islet of Langerhans
284
44
56
7
3
4
1
1
1
body of pancreas
3
35
4
2
2
spleen
20
1
2
1
pancreas
2
10
4
2
1
1
1
1
endocrine pancreas
16
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