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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
8
November, 2018
7
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
18
bam
18
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
18
tissue
Organ
786
pancreas
639
liver
597
connective tissue
457
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
150
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
18
AMP-T2D consortium
files.file_type!
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
14
2
1
1
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