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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
80
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
October, 2017
Available data
83
bam
83
fastq
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
93
Homo sapiens
Biosample type
61
cell line
24
tissue
8
primary cell
Organ
941
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
68
hg19
Lab
85
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
October, 2017
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
snATAC-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
60
1
tissue
spleen
20
2
1
1
primary cell
peripheral blood mononuclear cell
8
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