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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
pCHi-C
Assay category
80
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
1
January, 2018
October, 2017
Available data
83
bam
83
fastq
70
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
61
cell line
23
tissue
8
primary cell
Organ
940
pancreas
788
liver
678
connective tissue
524
epithelium
488
adipose tissue
390
heart
352
kidney
268
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
23
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
84
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
68
hg19
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
October, 2017
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
snATAC-seq
WGBS
ATAC-seq
DNase-seq
cell line
GM12878
60
1
tissue
spleen
20
2
1
primary cell
peripheral blood mononuclear cell
8
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