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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
59
DNA binding
9
DNA accessibility
Target of assay
42
transcription factor
8
RNA binding protein
8
chromatin remodeller
8
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
34
December, 2018
25
January, 2019
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
October, 2017
Available data
59
bam
59
fastq
52
bigWig
51
bed narrowPeak
51
bigBed narrowPeak
1
tsv
Organism
69
Homo sapiens
Biosample type
46
cell line
15
tissue
8
primary cell
Organ
934
pancreas
738
liver
682
connective tissue
524
epithelium
489
adipose tissue
393
heart
354
kidney
268
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
52
hg19
51
GRCh38
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
October, 2017
November, 2018
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
45
1
tissue
spleen
14
1
primary cell
peripheral blood mononuclear cell
8
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