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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
153
ChIP-seq
8
WGBS
8
snATAC-seq
6
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
153
DNA binding
17
DNA accessibility
8
DNA methylation
Target of assay
74
transcription factor
39
histone
39
histone modification
38
control
24
broad histone mark
15
RNA binding protein
15
narrow histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
34
December, 2018
25
January, 2019
25
November, 2018
23
October, 2018
12
July, 2019
8
January, 2021
2
February, 2020
2
January, 2018
2
March, 2020
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
524
bam
494
bigWig
402
tsv
126
fastq
79
bed narrowPeak
77
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
582
Homo sapiens
Biosample type
511
tissue
61
cell line
10
primary cell
1
in vitro differentiated cells
Organ
941
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
575
AMP
8
T1D
Genome assembly (visualization)
493
hg19
492
GRCh38
Lab
575
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2017
BIOSAMPLE
ASSAY
583 results
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total RNA-seq
ChIP-seq
WGBS
snATAC-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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