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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
173
ChIP-seq
63
ATAC-seq
11
snATAC-seq
9
DNase-seq
8
single cell RNA-seq
6
WGBS
5
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
299
Transcription
173
DNA binding
85
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Target of assay
109
histone
109
histone modification
60
broad histone mark
49
narrow histone mark
43
control
23
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
159
August, 2017
126
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
16
November, 2018
11
September, 2018
10
March, 2020
8
April, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
July, 2019
6
October, 2017
6
September, 2017
5
March, 2019
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
498
bam
428
bigWig
284
tsv
267
fastq
155
bed narrowPeak
82
bigBed narrowPeak
30
bed bed3+
22
bed broadPeak
16
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
8
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
569
Homo sapiens
Biosample type
530
tissue
31
primary cell
15
cell line
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
546
AMP
30
T1D
Genome assembly (visualization)
466
hg19
441
GRCh38
Lab
513
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
576 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
284
50
58
7
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
2
1
1
1
1
spleen
20
1
1
2
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
1
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