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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
35
DNase-seq
8
ATAC-seq
6
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
63
DNA binding
43
DNA accessibility
6
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
37
histone
37
histone modification
24
broad histone mark
20
control
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
1
October, 2017
Available data
112
bam
86
bigWig
85
bed narrowPeak
77
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
24
fastq
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
120
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
91
GRCh38
89
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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