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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
33
DNase-seq
22
total RNA-seq
6
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
2
WGBS
1
FAIRE-seq
1
RRBS
Assay category
267
DNA binding
40
DNA accessibility
29
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
215
histone
215
histone modification
125
narrow histone mark
90
broad histone mark
48
control
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
128
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
17
October, 2017
16
July, 2019
13
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
301
bam
260
bigWig
238
bed narrowPeak
160
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
39
fastq
35
bed bed3+
35
bigBed broadPeak
32
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
344
Homo sapiens
Biosample type
333
tissue
11
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
344
AMP
Genome assembly (visualization)
258
GRCh38
199
hg19
Lab
344
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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