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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
1
RNA microarray
Assay category
Transcription
93
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
August, 2017
23
October, 2018
10
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
November, 2019
1
October, 2019
Available data
68
bam
68
fastq
43
bigWig
27
bed narrowPeak
23
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
2
tsv
1
bedpe bed3+
Organism
114
Homo sapiens
Biosample type
114
tissue
1
in vitro differentiated cells
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
203
connective tissue
187
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
115
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
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