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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
98
ChIP-seq
35
ATAC-seq
8
WGBS
7
DNase-seq
7
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
98
DNA binding
42
DNA accessibility
9
DNA methylation
Target of assay
41
histone
41
histone modification
33
control
24
broad histone mark
24
transcription factor
17
narrow histone mark
6
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
10
November, 2018
8
June, 2019
7
December, 2018
7
January, 2019
3
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2019
Available data
473
bam
447
bigWig
407
tsv
68
fastq
60
bed narrowPeak
29
bigBed narrowPeak
11
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bedpe bed3+
Organism
576
Homo sapiens
Biosample type
569
tissue
7
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
577
AMP
Genome assembly (visualization)
474
hg19
446
GRCh38
Lab
577
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
577 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
1
2
1
1
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
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primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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