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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
93
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
8
WGBS
7
ATAC-seq
4
pCHi-C
3
DNase-seq
3
small RNA-seq
1
RNA microarray
Assay category
410
Transcription
93
DNA binding
20
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
April, 2020
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
2
February, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
466
bam
441
bigWig
403
tsv
68
fastq
27
bed narrowPeak
23
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
534
Homo sapiens
Biosample type
533
tissue
2
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
517
AMP
19
LungMap
Genome assembly (visualization)
440
GRCh38
440
hg19
Lab
517
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
536 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
DNase-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
lung
10
9
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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