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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
56
total RNA-seq
46
ATAC-seq
7
DNase-seq
2
Hi-C
2
WGBS
2
single cell RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
71
DNA binding
58
Transcription
54
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
41
histone
41
histone modification
27
broad histone mark
19
control
14
narrow histone mark
11
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
47
October, 2019
35
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
March, 2020
1
October, 2017
Available data
146
bam
116
bigWig
101
bed narrowPeak
59
tsv
51
bigBed narrowPeak
24
fastq
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
188
Homo sapiens
Biosample type
98
tissue
66
cell line
24
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
188
AMP
Genome assembly (visualization)
156
GRCh38
124
hg19
Lab
188
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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