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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
80
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
23
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
84
bam
84
fastq
71
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
93
Homo sapiens
Biosample type
61
cell line
24
tissue
8
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
68
hg19
Lab
85
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
primary cell
peripheral blood mononuclear cell
8
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