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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
80
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
23
November, 2018
8
January, 2021
January, 2018
1
March, 2020
1
October, 2017
Available data
84
bam
84
fastq
70
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
1
tsv
Organism
92
Homo sapiens
Biosample type
60
cell line
24
tissue
8
primary cell
Organ
939
pancreas
728
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
62
musculature of body
57
eye
41
nerve
36
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
67
hg19
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
cell line
GM12878
60
tissue
spleen
20
2
1
1
primary cell
peripheral blood mononuclear cell
8
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