Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
Assay category
80
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
23
November, 2018
8
January, 2021
1
January, 2018
March, 2020
1
October, 2017
Available data
84
bam
84
fastq
71
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
61
cell line
23
tissue
8
primary cell
Organ
925
pancreas
725
liver
673
connective tissue
496
epithelium
488
adipose tissue
356
heart
274
kidney
246
brain
215
vasculature
213
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
58
musculature of body
57
eye
41
nerve
37
embryo
23
spleen
19
lung
17
vein
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
84
AMP
8
T1D
Genome assembly (visualization)
69
GRCh38
68
hg19
Lab
84
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
March, 2020
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
92 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
cell line
GM12878
60
1
tissue
spleen
20
1
2
primary cell
peripheral blood mononuclear cell
8
Download