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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
RRBS
1
total RNA-seq
Assay category
80
DNA binding
11
DNA accessibility
3
DNA methylation
1
Transcription
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
January, 2021
2
July, 2019
1
January, 2018
March, 2020
1
October, 2017
Available data
85
bam
84
fastq
72
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
95
Homo sapiens
Biosample type
61
cell line
25
tissue
9
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
87
AMP
8
T1D
Genome assembly (visualization)
71
GRCh38
71
hg19
Lab
87
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
March, 2020
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
RRBS
total RNA-seq
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
pericardium
1
primary cell
peripheral blood mononuclear cell
8
pericardium fibroblast
1
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