Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
Assay category
62
Transcription
20
DNA binding
13
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
8
February, 2023
8
November, 2018
7
December, 2018
7
January, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
59
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
Organism
183
Homo sapiens
Biosample type
182
tissue
1
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
1
T1D
Genome assembly (visualization)
83
hg19
81
GRCh38
Lab
182
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
spleen
20
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 10 more…
primary cell
megakaryocyte
1
See all biosamples
Download