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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
58
Transcription
20
DNA binding
14
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
66
February, 2021
9
November, 2018
7
December, 2018
7
January, 2019
4
February, 2023
1
March, 2020
1
May, 2021
1
October, 2017
Available data
90
bam
txt
74
bigWig
59
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
95
tissue
1
primary cell
Organ
940
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
353
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
1
T1D
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
95
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
txt
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
bone tissue
58
spleen
20
1
2
1
1
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
primary cell
megakaryocyte
1
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