Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
15
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
10
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
October, 2019
4
December, 2018
3
November, 2018
2
March, 2020
1
January, 2019
1
May, 2021
Available data
16
bam
8
fastq
3
bigWig
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tar
1
tsv
Organism
20
Homo sapiens
Biosample type
11
primary cell
9
tissue
Organ
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
1
T1D
Genome assembly (visualization)
31
hg19
GRCh38
Lab
19
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assembly!
GRCh38
organ_slims!
pancreas
BIOSAMPLE
ASSAY
20 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
pCHi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
7
2
1
megakaryocyte
1
tissue
spleen
8
1
Download