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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
238
DNA binding
24
Transcription
6
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
193
histone modification
119
narrow histone mark
74
broad histone mark
39
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
91
November, 2017
86
October, 2019
28
May, 2019
18
July, 2019
17
October, 2017
12
February, 2020
8
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
234
bam
205
bigWig
184
bed narrowPeak
118
tagAlign
107
bigBed narrowPeak
42
fastq
27
tsv
15
bed broadPeak
6
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
278
Homo sapiens
Biosample type
262
tissue
16
primary cell
Organ
938
pancreas
785
liver
675
connective tissue
505
epithelium
489
adipose tissue
323
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
278
AMP
Genome assembly (visualization)
200
GRCh38
155
hg19
Lab
278
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
spleen
20
1
1
2
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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