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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
51
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
238
DNA binding
57
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
193
histone modification
119
narrow histone mark
74
broad histone mark
39
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
91
November, 2017
86
October, 2019
48
June, 2019
28
May, 2019
18
July, 2019
17
October, 2017
12
February, 2020
11
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
1
February, 2023
Available data
285
bam
256
bigWig
235
bed narrowPeak
158
bigBed narrowPeak
118
tagAlign
66
bed broadPeak
57
bigBed broadPeak
54
bed bed3+
45
fastq
27
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
329
Homo sapiens
Biosample type
308
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
329
AMP
Genome assembly (visualization)
251
GRCh38
196
hg19
Lab
329
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
329 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
20
14
1
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 81 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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