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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
33
DNase-seq
17
total RNA-seq
8
snATAC-seq
6
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
298
DNA binding
48
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
194
histone
194
histone modification
120
narrow histone mark
74
broad histone mark
60
transcription factor
45
control
13
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
91
November, 2017
86
October, 2019
34
December, 2018
30
June, 2019
28
May, 2019
26
November, 2018
25
January, 2019
18
July, 2019
17
October, 2017
12
February, 2020
8
January, 2021
3
March, 2020
1
February, 2023
1
January, 2018
Available data
327
bam
293
bigWig
271
bed narrowPeak
194
bigBed narrowPeak
118
tagAlign
105
fastq
48
bed broadPeak
39
bigBed broadPeak
36
bed bed3+
27
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
380
Homo sapiens
Biosample type
290
tissue
61
cell line
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
372
AMP
8
T1D
Genome assembly (visualization)
287
GRCh38
233
hg19
Lab
372
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
20
14
1
1
1
spleen
20
1
1
1
2
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
+ See 78 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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