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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
33
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
WGBS
1
FAIRE-seq
Assay category
119
DNA binding
39
DNA accessibility
24
Transcription
4
DNA methylation
3
3D chromatin structure
Target of assay
193
histone
193
histone modification
narrow histone mark
74
broad histone mark
39
control
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
60
November, 2017
30
June, 2019
18
July, 2019
18
May, 2019
15
October, 2017
12
February, 2020
12
October, 2019
11
November, 2018
7
December, 2018
5
January, 2019
3
March, 2020
1
February, 2023
Available data
160
bam
130
bigWig
109
bed narrowPeak
105
bigBed narrowPeak
64
tagAlign
40
bed broadPeak
39
fastq
36
bed bed3+
36
bigBed broadPeak
27
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
Organism
192
Homo sapiens
Biosample type
174
tissue
18
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
124
GRCh38
84
hg19
Lab
192
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
FAIRE-seq
tissue
brain
16
14
1
1
1
spleen
18
1
1
1
2
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
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primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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