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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
9
February, 2018
9
November, 2018
7
December, 2018
7
January, 2019
1
January, 2018
1
March, 2020
1
October, 2017
Available data
47
fastq
46
bam
31
bigWig
28
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
48
Homo sapiens
Biosample type
25
tissue
23
in vitro differentiated cells
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
1
hg18
Lab
48
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
20
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
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