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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
29
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
12
histone
12
histone modification
11
control
7
broad histone mark
6
transcription factor
5
narrow histone mark
3
other context
3
other post-translational modification
Date released
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
47
bam
38
fastq
37
bigWig
20
bed narrowPeak
15
tsv
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
49
Homo sapiens
Biosample type
25
tissue
16
in vitro differentiated cells
8
cell line
Organ
946
pancreas
728
liver
684
connective tissue
505
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
36
GRCh38
34
hg19
1
hg18
Lab
49
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
20
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
9
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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