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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
12
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
42
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
58
bam
51
fastq
43
bigWig
28
bed narrowPeak
13
bigBed narrowPeak
13
tsv
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
27
in vitro differentiated cells
25
tissue
8
cell line
Organ
885
pancreas
791
liver
682
connective tissue
498
epithelium
491
adipose tissue
354
kidney
350
heart
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
43
GRCh38
41
hg19
1
hg18
Lab
60
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2021
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
tissue
spleen
20
2
1
1
1
cell line
H1-hESC
8
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