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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
14
total RNA-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
102
DNA binding
14
Transcription
11
DNA accessibility
2
DNA methylation
Target of assay
60
transcription factor
21
control
19
histone
19
histone modification
11
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
8
broad histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
13
December, 2017
13
February, 2018
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
1
March, 2020
1
October, 2017
Available data
120
bam
111
fastq
100
bigWig
82
bed narrowPeak
67
bigBed narrowPeak
15
tsv
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
131
Homo sapiens
Biosample type
69
cell line
29
in vitro differentiated cells
25
tissue
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
8
T1D
Genome assembly (visualization)
99
GRCh38
98
hg19
1
hg18
Lab
123
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
GRO-seq
pCHi-C
cell line
GM12878
60
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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